Type: Package
Package: vivaldi
Title: Viral Variant Location and Diversity
Version: 1.0.1
Authors@R: c(
    person("Marissa", "Knoll", role = "aut"),
    person("Katherine", "Johnson", role = "aut"),
    person("Megan", "Hockman", role = "aut"),
    person("Eric", "Borenstein", role = "aut"),
    person("Mohammed", "Khalfan", role = "aut"),
    person("Elodie", "Ghedin", role = "aut"),
    person("David", "Gresham", , "dg107@nyu.edu", role = c("aut", "cre", "cph"))
  )
Description: Analysis of minor alleles in Illumina sequencing data of
        viral genomes. Functions in 'vivaldi' primarily operate on vcf
        files.
License: MIT + file LICENSE
URL: https://github.com/GreshamLab/vivaldi
BugReports: https://github.com/GreshamLab/vivaldi/issues
Imports: dplyr (>= 1.0.2), ggplot2 (>= 3.3.2), glue (>= 1.4.2),
        magrittr (>= 2.0.1), plotly (>= 4.10.0), seqinr (>= 4.2-8),
        tidyr (>= 1.1.2), tidyselect (>= 1.1.2), vcfR (>= 1.12.0)
Suggests: kableExtra, knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
Config/testthat/edition: 3
Depends: R (>= 2.10)
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev libssl-dev
        zlib1g-dev
Repository: https://greshamlab.r-universe.dev
Date/Publication: 2026-06-16 23:56:01 UTC
RemoteUrl: https://github.com/greshamlab/vivaldi
RemoteRef: HEAD
RemoteSha: 919006960bd5125e642351e6330df90435cc97aa
NeedsCompilation: no
Packaged: 2026-06-17 00:30:57 UTC; root
Author: Marissa Knoll [aut],
  Katherine Johnson [aut],
  Megan Hockman [aut],
  Eric Borenstein [aut],
  Mohammed Khalfan [aut],
  Elodie Ghedin [aut],
  David Gresham [aut, cre, cph]
Maintainer: David Gresham <dg107@nyu.edu>